One of our bank deposits does not appear on the reconciliation, but it does show up everywhere else it should.  We cannot reconcile the checking account for FY 2007.
 
What do we do now?  

If it was applied to the wrong bank account, do a transfer with GL-K.
 
If it was applied to the wrong bank account, and the account number was changed using GL-P before posting, or if it was done in GL-B and not as type CD or CR, you can add a record to BKGLCHK using Maintain Database.

If it exists everywhere EXCEPT the bank rec, then enter it again in GL-B as a Cash Receipt and post in GL-B but go to GL-P and delete the transactions before posting GL-O so it doesn't hit the GL again.