GL-B is a viable spot. That's how we do it. Just make sure you select Type 3 - "Cash Disbursement" or it won't show up in the check register/reconciliation. There is no way to put any more information there. I agree it would be nice if there was a comment area.
 
You could also do a check, and print it on plain paper, or even on a real check. If you do a check you could make the remittance address "Paid online via EFT" or some such thing.

In Addition to Jeannette's reply, I would like to add a few thoughts.  I believe in strong trails of information - so I have an AP voucher for everything that requires an exchange of money.  (e.g.) I have a had form that I have my payroll clerk use when she does payroll so that the payroll taxes can be entered in AP-B and then paid when the auto draw comes through the bank.  This way I am never surprised by what has been drawn out of the bank.  I can view my daily banking activity on the internet so I know exactly where I am at and what to expect.  When the draw comes through, I go and pick the voucher that came thru and create a check for it. If you do not want to actually print a check - Use a code for your check number that indicates an auto draw (I use 5557) and print the check to the screen.  I use Jouranl Entries as little as possibly because of the lack of tracking and information.
 
Rhonda Meyerhoff
6 user
Linn Enterprises, Inc.