First, DBA/Evo does not have the ability to actually DO the direct deposit. All it does is lump all the net pay together rather than post individual check amounts against your Checking Account for each payroll run and print "NOT A CHECK" in the signature area of the check.
 
We have employees with up to four(!) accounts their paycheck goes into. We enter the amount going into each account on our banks ACH website. If you're going to try and use an export file of some sort, then you'd have to have some kind of intermediary step to separate the amounts.